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A CMS will sometimes include a meta tag within the html of each page. This is usually a "generator" tag like <meta name="generator" content="What CMS" /> but could also be "application-name", "Powered-By" or anyting else the CMS creators decide to use.
Similar to identifiable html markup, a CMS will sometimes insert unique Javascript code into web pages.
In addition to detecting the CMS, in some cases we are able to accurately detect which version of the CMS is being used.
Dedicated Content Management System Detection